Wednesday, 16 May 2012
Is exposure to angiotensin converting enzyme inhibitors related to Alzheimer’s disease?
Wednesday, 9 May 2012
Mendelian Randomisation and the Prevention of Spurious Findings
Epidemiology uses statistical methods to investigate patterns in public health. Or, if you believe certain news articles, it splits every possible life influence into things that either cause or cure cancer (or occasionally do both). Epidemiologists investigate health outcomes in a number of different ways, ranging from looking at changes in whole populations to conducting randomised controlled trials (RCTs), testing one intervention against another, or against the placebo effect. RCTs are the 'Gold Standard' of Epidemiological research, as their design means they can provide the strongest evidence for or against a hypothesis. Other epidemiological methods involve observation, rather than manipulation, and this can be problematic.
One week there may be a paper suggesting vitamin pills protect against heart disease, and the next week evidence emerges that they don't. This is often because of misleading findings from observational studies. People who decide to take vitamin supplements are likely to be different in a number of ways from people who don't take them. They might lead a more healthy lifestyle, exercise more, smoke less, and eat more vegetables. These differences are likely to impact on their chance of getting heart disease. Epidemiologists call these differences confounding variables, and although it's possible to take them into account in various statistical ways, the scientist has to know what they are in order to control for them. Miss one confounder out of your analysis, and it may inflate any relationship between the two factors you're interested in, so you've got a spurious finding. One way of getting round this problem is to conduct RCTs, so different types of people are randomly distributed across your intervention condition. Although this may be fine to do with a vitamin pill, it's sometimes not ethical or even possible. If withholding the intervention being investigated is thought to lead to harm, it is unethical to do so, and if the intervention is something like drinking alcohol, it's impractical to get people to either drink or not drink for an experiment.
Investigating alcohol in observational studies has the same problems mentioned above; people who drink are different to people who don't. Socioeconomic status, likelihood to smoke and education level may all affect the relationship you're interested in. There are added complications in that people may have stopped drinking because they are unwell, so instead of drinking affecting the disease, the disease is changing alcohol use. This is called reverse causation, and may explain why we hear that a glass of wine is good for you (sorry to be the bringer of bad news).
But advances in the understanding of genetics can help. Everyone has 23 pairs of chromosomes, and coded in these are genes; the building blocks for who we are. My genes are practically identical to yours, but there are some key genes which have different DNA code in different people. Some of these differences can lead to diseases, such as Cystic Fibrosis, caused by a faulty gene not properly making an important protein. Some have less extreme, but still very interesting, effects. There has been a gene variation found, common in East Asian populations, which means a protein needed to break down a metabolite of alcohol is not produced. People with this variation get unpleasant symptoms when they drink due to a build up of acetaldehyde in their blood, so very often they avoid alcohol. By looking at someone's DNA in the location known here, we can investigate the effect of alcohol use on whatever we're interested in, using the gene as a proxy variable instead of directly analysing alcohol intake, as people with the unusual variation will be less likely to drink. All well and good, but surely this is still just observing, so how do we stop the interference of confounding?
It turns out that our genes have some very useful properties which make them perfect for this task. The genes that you have are all unrelated to environment, as you got them before you were born, so environmental confounders should be randomly distributed between your gene categories. Also, when your parents' chromosomes divided to create the egg or sperm that contained the genes you inherited from them, each gene splits independently of all the others, so you have a random chance of also inheriting a genetic confounder. Because of these neat properties, you can assume that your proxy gene will be independent of any confounding variable affecting the exposure you're interested in, and therefore where confounder levels would have been uneven across people grouped by alcohol consumption, they will be randomly distributed across gene variation. Results using this technique have shown evidence against alcohol being a gateway drug leading to illicit drug use, as the gene variation was not associated with illicit drug use.
Of course, nothing's perfect. There are a few conditions where this technique will fall down, but as long as you're aware of them, you should be able to avoid the problems. Firstly, occasionally 'linkage disequilibrium' occurs. Certain genes are more likely to move together during meiosis, meaning they are not inherited independently. If your proxy gene travels with a gene which affects your outcome of interest, this will impact on your findings. There is a method to check for linkage disequilibrium, so you can ensure it's not a problem. Also, there are certain genes which have an impact on a number of different traits (this is called pleiotropy), so if your gene has a direct effect on the outcome you are interested in, it is unsuitable for Mendelian Randomisation. Finally, the technique fails to work effectively if there are systematic differences in the genetics of the population you are investigating. For example, if a population is made up of two groups of peoples that used to live separately, but now live together, there will be non random genetic differences between the groups due to selective mating over the time when they were separate. This may mean other differences between the groups will not be randomly distributed across the gene you're interested in, making the population unsuitable.
However, although this technique can only be used in very specific circumstances, where a gene is known to affect the intervention you're interested in, and doesn't suffer from the limitations mentioned above, it is a really elegant technique which will hopefully stop the spurious results from observational studies becoming newspaper fodder.
Check this article out for an overview of MR.
Tuesday, 8 May 2012
Ding Ding All Change
A couple of weeks ago this blog moved to Nature Network. Very exciting times for us! We'll still be updating this page with the posts that appear on our blog there (which is still called Sifting the Evidence, and can be found here), but they will appear a couple of days after. Feel free to look at them and enjoy them on either site!
Tuesday, 14 February 2012
Geek Like Me?
Should scientists steer clear of identifying themselves as geeks in case it puts off ‘more rounded’ individuals from taking up a STEM (science technology engineering and mathematics) career?
Monday, 5 December 2011
Who are the Children of the 90s?
If you were down on Bristol Harbourside this weekend you may have noticed an event at MShed, or heard mention of ‘Children of the 90s’. Who are these children, and what were they doing at the museum? The answer involves a journey more than 20 years back in time, and the vision and foresight of Bristol Professor Jean Golding.
Wednesday, 9 November 2011
It’s demography stupid!
Tuesday, 1 November 2011
First Class Mutations
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| Beasts on a plane! |
Friday, 28 October 2011
Alcohol: ‘more harmful than heroin’, or all in the mind?
If you’ve been following reports in the media recently, you may be a little confused about alcohol and its’ effects. A year ago, the Independent Scientific Committee on Drugs published a report on drug harms in the Lancet. They calculated harm scores, to an individual and to society as a whole, and found that alcohol was more damaging than heroin or crack cocaine. And only this week the Royal College of Physicians released a report about alcohol. It provides evidence that our livers need three days alcohol free per week, if we have more than one or two drinks per day. If you drink heavily one evening, you should have a couple of days off before you drink again. From this evidence, it seems that alcohol is bad news.
Friday, 7 October 2011
Dynamite Money
| Housing Genius: the Nobel Museum, Stockholm |
This will span three of the five categories, so anyone from physics, chemistry or physiology/medicine is eligible, but I won’t feature winners of the literature or peace prizes (for, in the eyes of this blog, these are domains of beatniks). And economics also squeaks in, despite its unofficial status. The prizes have been awarded for a diverse array of amazing theories, discoveries and innovations, from radioactivity to IVF, and are given to personalities of every shade, from the outspoken to (perhaps predictably) the somewhat autistic. But first, we’ll start with the Growling Bear himself: Alfred Nobel.
Friday, 30 September 2011
Friday, 19 August 2011
Global warming, carbon emissions and hyperactive government policy: when less is more.
A little? Just about kept emissions from increasing?
Wednesday, 17 August 2011
Why we should be wary of the tobacco companies
There have been reports today that five tobacco companies are trying to sue the USA Food and Drug Administration (FDA) over new laws that will come in to place in September, forcing them to display graphic health warnings on their products. These are similar to warnings used here in UK, and in many other countries around the world.
Putting aside for a moment their farcical suggestion that this removes their constitutional right to free speech, it has brought a more alarming fact to my attention; namely that this is the first legal change to cigarette packaging in 25 years. How has the USA government allowed them to get away with so much for so long? Of course a large part of the answer is the financial control that these companies have; their lobbying has funded campaigns to keep shop displays of smoking products, and allegedly funded grass-roots organisations denouncing governmental smoking laws as ‘nannying’.
Tuesday, 9 August 2011
Lies, damn lies and public sector deficits
Monday, 8 August 2011
What Didn't Kill Mozart
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| Not one for bronzing up |
Wednesday, 3 August 2011
Generation F?
Tuesday, 2 August 2011
Raise A Glass To The Birth Cohort
Monday, 1 August 2011
Pot Luck – does smoking cannabis really increase your chances of becoming psychotic?
Thursday, 28 July 2011
Why is the UK growing so slowly?
The reality is that manufacturing employment has been trending downwards for 50 years.
… the fraction of all the workers in the United States who are engaged in manufacturing production right now, is less than a fraction of the workers who were engaged in farming in the late 1950's, and it's a very similar phenomenon.
Wednesday, 27 July 2011
Press Releases
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| The NHU "are the best in the world" but there's room for improvement |






